Can not perform this operation.The file is no longer checked out or has been deleted

SharePoint Designer.  Sometimes you really are a pain.  I was having issues checking in and out files from Designer 2010.  I fixed it by wiping out the cache locations:

C:\Users\<your user account>\AppData\Roaming\Microsoft\SharePoint Designer
C:\Users\<your user account>\AppData\Local\Microsoft\WebsiteCache

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